3D anatomical illustration of the human liver, gallbladder, stomach, intestines, and surrounding blood vessels, showing detailed structure and realistic textures

Fatty Liver Root Causes & 90-Day Functional Wellness Support

Posted by Delilah Ko on

This post may contain affiliate links. Full disclosure at the bottom.

Fatty Liver Isn’t Just About Fat — It’s a Sign Your Whole Body Is Out of Balance

Let's face it, if doctors have diagnosed you with a "fatty liver," you likely feel confused or even dismissed. But fatty liver disease (NAFLD or AFLD) is not just about eating too much fat or being overweight. It’s your body trying to tell you there’s a deeper imbalance going on — usually starting in your gut, hormones, or nutrient levels.

In this blog, we’ll break it down in a way that actually makes sense — what causes it, how everything is connected (like your gut, thyroid, pancreas, and gallbladder), what tests to run, and, most importantly, how to start healing with functional medicine tools and a 90-day plan.


What Else Contributes to Fatty Liver Disease?


1. Cholesterol Confusion

Are you experiencing elevated levels of LDL or triglycerides? Yes—that’s not just a heart issue. It’s often a liver warning. When the liver isn’t processing fats right, cholesterol builds up. [Study]

2. Iron — Too Much or Too Little

Low iron messes with bile production. Too much iron causes oxidative damage. Either one can throw your liver off. [Study]

3. Pancreas & Insulin Resistance

Fat around the pancreas slows down insulin production. Less insulin = more blood sugar = more fat in the liver. It's all connected. [Study]

4. Gallbladder Struggles

Your gallbladder helps digest fat. If it’s sluggish (or removed), bile doesn’t flow right, and that can lead to fat building up in the liver. [Study]

5. The Gut-Liver Connection

If your gut lining is leaky or overrun with bad bacteria (aka dysbiosis), toxins like LPS slip into your bloodstream, triggering liver inflammation, poor detox, and fat buildup in the liver. [Study]

Want to support your gut first? Read “Leaky Gut & Dysbiosis: The Hidden Gut Imbalances Behind Fatigue, Brain Fog, and Inflammation” to start understanding the root cause.

 

Illustration of the human digestive tract showing labeled graphics for dysbiosis and leaky gut, with visual icons representing gut bacteria and intestinal lining

6. Thyroid Function

Low thyroid (even “normal but low”) slows metabolism, reduces bile flow, and increases liver fat. It’s one of the most under-checked root causes. [Study]

7. Hormones Are Huge

High insulin = more fat storage. High cortisol = more inflammation. Estrogen dominance = liver overload. If your hormones are off, your liver is likely suffering. [Study]

8. Diet (It’s Not Just Calories)

Fructose (like in sodas or packaged snacks) converts straight into liver fat. Refined carbs and harmful oils (like canola or soybean) also add fuel to the fire. [Study]

9. Missing Nutrients

You may think you are eating "healthy," but you could still be lacking essential nutrients that your liver needs to function properly.

  • Choline—helps ship fat out of the liver
  • Magnesium helps your body use insulin better
  • Vitamin D—lowers inflammation
  • Zinc—supports detox enzymes

[Study]


 Functional Medicine Testing You Should Consider

  • GI-MAP or stool test—to find gut imbalances, candida, parasites, or leaky gut
  • Full Thyroid Panel—not just TSH. Include Free T3, Free T4, RT3, TPO
  • Fasting Insulin + HOMA-IR—screens for early insulin resistance
  • Liver Enzymes—ALT, AST, GGT to measure inflammation
  • Vitamin D, Magnesium, zinc—critical liver nutrients
  • Ferritin + Iron Panel—check for overload or deficiency

 Your 90-Day Liver Reset Protocol

 Phase 1: Drainage & Detox (Days 1–30)

  • Choline—moves fat out of the liver
  • Vitamin D—supports immune + inflammation
  • Magnesium + Zinc—reduce insulin resistance + oxidative stress
  • Lifestyle: Castor oil packs, dry brushing, lots of water

 Phase 2: Gut & Mitochondria (Days 31–60)

  • Berberine—amazing for blood sugar and gut health
  • Milk Thistleregenerates liver cells
  • Taurine—helps bile flow and reduces oxidative stress
  • Focus: Fermented foods, low sugar, fiber-rich meals

 Phase 3: Hormones + Maintenance (Days 61–90)

  • TUDCA—bile flow, detox, and cell repair
  • Optional: DIM + Calcium D-Glucarate if estrogen is high
  • Keep going: Whole foods, hydration, and balanced movement

Your Liver-Loving, Low Glycemic Diet

It aids in stabilizing blood sugar, reducing cravings, and supporting insulin levels.

  • Veggies: Broccoli, spinach, kale, cauliflower
  • Fruits: Berries, grapefruit, green apples
  • Grains: Quinoa, oats, barley
  • Legumes: Lentils, black beans
  • Fats: Avocados, flax, walnuts
  • Dairy Alternatives: Coconut yogurt, unsweetened almond milk

Foods to Avoid for Now

  • Sugar-sweetened drinks (fructose overload)
  • White bread, pasta, and pastries
  • Seed oils like canola, soybean, corn oil
  • Heavy alcohol or daily drinking

 Liver-Supporting Superfoods

  • Cruciferous veggies (broccoli, Brussels sprouts)
  • Dandelion greens, parsley, cilantro (bile support)
  • Egg yolks, sunflower lecithin (choline-rich)
  • Wild-caught fish, flaxseeds, chia (anti-inflammatory fats)
  • Turmeric, garlic, green tea (detox + antioxidant)

Supplements

Supplement Why It Helps Suggested Dosage
Choline Moves fat out of liver 550 mg/day
Vitamin D Reduces liver inflammation 2,000–5,000 IU/day
Magnesium Improves insulin response 300–400 mg/day
Zinc Boosts detox + protects cells 30–50 mg/day
Berberine Balances blood sugar + gut 500 mg twice daily
Taurine Supports bile + mitochondria 500–1000 mg/day
Milk Thistle Protects and regenerates liver 200–400 mg/day
TUDCA Improves bile flow and repairs cells 250–500 mg twice daily

 

[Choline and fatty liver study]

Note: Always talk to your practitioner before starting new supplements.


📝 Key Takeaways

  • Fatty liver is a sign of systemic imbalance — not just diet or weight.
  • Gut health, hormones, the thyroid, bile flow, and nutrients all play a role.
  • Run targeted tests and use a functional 90-day plan to begin healing.
  • Food is powerful: choose low-glycemic, liver-supporting meals daily.


Final Thoughts

If you're dealing with fatty liver, please know this: Fatty liver can improve with the right approach. However, the key is to understand your body and provide it with the necessary nutrients to function properly.

This is a root cause of healing. This approach is how you take your power back.

Start with testing. Heal your gut. Fix the metabolic triggers. And watch your body come back into balance — one intentional step at a time.

 

Was this helpful? Let me know below or share with a friend who needs to read this.

 

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About the Author
Written by Delilah Ko, a functional medicine student passionate about uncovering the root causes of chronic conditions. Delilah combines science-backed research with holistic insights to make complex health topics accessible and empowering.

 


 

Disclaimer:

This blog is written by a student currently studying functional medicine and is intended for educational and informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment. Always consult your healthcare provider before starting any new supplement or protocol, especially if you have an underlying medical condition or are taking medications.

 

Affiliate Disclosure: Some of the links shared in this blog may be affiliate links. This means I may earn a small commission if you choose to make a purchase through them — at no additional cost to you. I only recommend products I trust or personally use. Thank you for supporting this blog and my work in functional medicine!

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